Our Research
01
Functional genomic investigation of cancer therapeutic targets
Advances in CRISPR/Cas9 technologies have enabled large-scale multiplexed investigation of therapeutic targets and genetic interactions across normal and disease contexts. We develop and use large-scale functional genomics coupled with multi-modal single cell and spatial readouts (e.g. in vivo perturb-seq, snARC-seq) to identify and characterize targets that improve the therapeutic efficacy of cancer therapies in brain tumors. We are especially interested in pursuing new combination therapeutics for both adult and pediatric gliomas.
- In vivo perturb-seq of cancer and microenvironment cells dissects oncologic drivers and radiotherapy responses in glioblastoma. Genome Biol 25, 256 (2024).
- Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nat Commun 15, 476 (2024).
- CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma. Genome Biol 21, 83 (2020).
- CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science 355, aah7111 (2017).
02
Understanding and overcoming radiation treatment resistance in brain tumors
The ability of cancer cells to repair DNA damage caused by radiation therapy is a major barrier to effective treatments for patients with brain tumors. We are interested in targeting known and novel vulnerabilities (including non-coding genes) involved in the DNA damage response to improve therapeutics against brain tumors such as adult glioblastoma and pediatric diffuse midline glioma, among the deadliest primary brain tumors. We use a combination of functional genomics, clinical genomics on patient tumors, computational modeling, animal models, organoids, and molecular biology to pursue this.
- CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma. Genome Biol 21, 83 (2020).
03
Developing and translating novel brain tumor therapeutics
Engineered CRISPR/Cas9 systems enable precise control of gene expression and epigenetic state in cells and tumors. We develop and test novel cellular therapies, genetic and epigenetic editing strategies, along with drug delivery approaches including convection enhanced delivery, nanoparticles, and focused ultrasound for in vivo applications in neuro-oncology. Our goal is to enable translation toward early phase clinical trials.
- Multiplexed epigenetic memory editing using CRISPRoff sensitizes glioblastoma to chemotherapy. Neuro-Oncology noaf055 (2025).
We acknowledge generous support from